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Publications

2024

  • Bottino GF, Bonham KS, Pate F, McCann S, Zieff M, Naspolini N, Ho D, Portlock T, Joos R, Midani FS, Schüroff P, Das A, Shennon I, Wilson BC, O’Sullivan JM, Britton RA, Murray DM, Kiely ME, Taddei CR, Beltrão-Braga PCB, Campos AC, Polanczyk GV, Huttenhower C, Donald KA, Klepac-Ceraj V*. Early life microbial succession in the gut follows common patterns in humans across the globe.  BioRxiv: doi: https://doi.org/10.1101/2024.07.25.605223.

  • Bonham KS, Margolis, ET, Bottino G, Patel F, McCann S, Zieff MR, Donald KA, Gabard-Durnam LJ*, Klepac-Ceraj V*. Co-development of gut microbial metabolism and visual neural circuitry in human infants. medRxiv: doi: https://doi.org/10.1101/2024.07.24.24310884(*=co-corresponding author)

  • Laue HE, Bonham KS, Coker MO, Moroishi, Y, Hoen AG, Karagas MR;  Klepac-Ceraj V*, Madan JC*. Prospective association of the infant gut microbiome with autism-related behaviors in the ECHO consortium. Molecular Autism 15, 21 (2024). https://doi.org/10.1186/s13229-024-00597-2(*=co-corresponding author)

  • Margolis ET, Davel L, Bourke NJ, Bosco C, Zieff MR, Monachino AD, Mazubane T, Williams SR, Miles M, Jacobs CA, Williams S, Bradford L, Knipe C, Madi Z, Methola B, Mhlakwaphalwa T, Mlandu N, Nkubungu K, Goolam Nabi Z, Pan T, Samuels R, Pini N, Klepac-Ceraj V, Fifer WP, Alexander DC, Jones DK, Williams SCR, Amso D, Donald KA, Gabard-Durnam LJ. Longitudinal effects of prenatal alcohol exposure on visual neurodevelopment over infancy. Dev Psychol. 2024 Mar 21. doi: 10.1037/dev0001727. Epub ahead of print. PMID: 38512192.

  • Zieff, MR, Miles M, Mbale E, Eastman E, Ginnell L, Williams SCR, Alexander DC, Wijeratne PA, Gabard-Durnam LJ, Klepac-Ceraj V, Bonham KS, Pini N, Sania A, Lucchini M, Deoni S, Fifer WP, Gladstone M, Amso D, Donald KA. Characterizing developing executive functions in the first 1000 days in South Africa and Malawi: The Khula Study. [version 1; peer review: 2 approved with reservations]. Wellcome Open Res 2024, 9:157 https://doi.org/10.12688/wellcomeopenres.19638.1.

2023

  • Bonham K.S., Fahur Bottino G., McCann S.H., Beauchemin J., Weisse E., Barry F., Cano Lorente R.; RESONANCE Consortium; Huttenhower C., Bruchhage M., D'Sa V., Deoni S., Klepac-Ceraj V. (2023). Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science Advances. 9(51):eadi0497. doi: 10.1126/sciadv.adi0497.

  • Schoenborn, A. A., Yannarell, S. M., MacVicar, C. T., Barriga-Medina, N. N., Markillie, M., Mitchell, H., Bonham, K.S., Leon-Reyes, A., Riveros-Iregui, D., Klepac-Ceraj, V.*, & Shank, E.A.* (2023). Microclimate is a strong predictor of the native and invasive plant-associated soil microbiota on San Cristóbal Island, Galápagos archipelago. Environmental Microbiology. 2023 Mar 7. DOI: 10.1111/1462-2920.16361. (*=co-corresponding author)

  • Rahman, T., Sarwar, P. F., Potter, C., Comstock, S.*, & Klepac-Ceraj, V*. (2023). Role of human milk oligosaccharide metabolizing bacteria in the development of atopic dermatitis/eczema. Frontiers in Pediatrics, 11, 315. doi: 10.3389/fped.2023.1090048(*=co-corresponding author)

  • Cohen, A. B., Klepac-Ceraj, V., Bidas, K., Weber, F., Garber, A. I., Christensen, L. N., Cram, J.A., McCormick, M.L., & Taylor, G. T. (2023). Deep photoautotrophic prokaryotes contribute substantially to carbon dynamics in oxygen-deficient waters in a permanently redox-stratified freshwater lake. Limnology and Oceanography, 68(1), 232–247. doi: 10.1002/lno.12262.

2021

  • Bonham, K. S., Kayisire, A. A., Luo, A. S., & Klepac-Ceraj, V. (2021). Microbiome. jl and BiobakeryUtils. jl-Julia packages for working with microbial community data. Journal of Open Source Software, 6(67), 3876. https://joss.theoj.org/papers/10.21105/joss.03876.

  • Lewis, C. R., Bonham, K. S., McCann, S. H., Volpe, A. R., D’sa, V., Naymik, M. De Both, M.D., Huentelman, M.J., Lemery-Chalfant, K., Highlander, S.K., Deoni, S.C.L., & Klepac-Ceraj, V. (2021). Family SES is associated with the gut microbiome in infants and children. Microorganisms, 9(8), 1608. doi:10.3390/microorganisms9081608.

  • Ferro, L. E., Sugino, K. Y., Klepac-Ceraj, V., & Comstock, S. S. (2021). The Abundance of Human Milk Oligosaccharide (HMO)-Metabolizing Genes in Fecal Samples from Six-Month-Old Human Infants. Microorganisms, 9(7), 1352. doi:10.3390/microorganisms9071352.

  • Ferro, L., Sugino, K., Klepac-Ceraj, V., & Comstock, S. (2021). Human milk oligosaccharide (HMO) metabolizing gene abundances in human infant fecal samples. Current Developments in Nutrition, 5(Supplement_2), 741–741.

  • Tso, L., Bonham, K. S., Fishbein, A., Rowland, S., & Klepac-Ceraj, V. (2021). Targeted high-resolution taxonomic identification of Bifidobacterium longum subsp. infantis using human milk oligosaccharide metabolizing genes. Nutrients, 13(8), 2833. doi:10.3390/nu13082833.

  • Peterson, D., Bonham, K. S., Rowland, S., Pattanayak, C. W., Consortium, R., & Klepac-Ceraj, V. (2021). Comparative analysis of 16S rRNA gene and metagenome sequencing in pediatric gut microbiomes. Frontiers in Microbiology, 12, 670336. doi:10.3389/fmicb.2021.670336.

  • Rojas, C. A., De Santiago Torio, A., Park, S., Bosak, T., & Klepac-Ceraj, V. (2021). Organic electron donors and terminal electron acceptors structure anaerobic microbial communities and interactions in a permanently stratified sulfidic lake. Frontiers in Microbiology, 12, 620424. doi:10.3389/fmicb.2021.620424.

2020

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2017

2015

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2013

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