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  • Bonham K.S., Fahur Bottino G., McCann S.H., Beauchemin J., Weisse E., Barry F., Cano Lorente R.; RESONANCE Consortium; Huttenhower C., Bruchhage M., D'Sa V., Deoni S., Klepac-Ceraj V. (2023). Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. Science Advances. 9(51):eadi0497. doi: 10.1126/sciadv.adi0497.

  • Schoenborn, A. A., Yannarell, S. M., MacVicar, C. T., Barriga-Medina, N. N., Markillie, M., Mitchell, H., Bonham, K.S., Leon-Reyes, A., Riveros-Iregui, D., Klepac-Ceraj, V.*, & Shank, E.A.* (2023). Microclimate is a strong predictor of the native and invasive plant-associated soil microbiota on San Cristóbal Island, Galápagos archipelago. Environmental Microbiology. 2023 Mar 7. DOI: 10.1111/1462-2920.16361. (*=co-corresponding author)

  • Rahman, T., Sarwar, P. F., Potter, C., Comstock, S.*, & Klepac-Ceraj, V*. (2023). Role of human milk oligosaccharide metabolizing bacteria in the development of atopic dermatitis/eczema. Frontiers in Pediatrics, 11, 315. doi: 10.3389/fped.2023.1090048(*=co-corresponding author)

  • Cohen, A. B., Klepac-Ceraj, V., Bidas, K., Weber, F., Garber, A. I., Christensen, L. N., Cram, J.A., McCormick, M.L., & Taylor, G. T. (2023). Deep photoautotrophic prokaryotes contribute substantially to carbon dynamics in oxygen-deficient waters in a permanently redox-stratified freshwater lake. Limnology and Oceanography, 68(1), 232–247. doi: 10.1002/lno.12262.


  • Bonham, K. S., Kayisire, A. A., Luo, A. S., & Klepac-Ceraj, V. (2021). Microbiome. jl and BiobakeryUtils. jl-Julia packages for working with microbial community data. Journal of Open Source Software, 6(67), 3876.

  • Lewis, C. R., Bonham, K. S., McCann, S. H., Volpe, A. R., D’sa, V., Naymik, M. De Both, M.D., Huentelman, M.J., Lemery-Chalfant, K., Highlander, S.K., Deoni, S.C.L., & Klepac-Ceraj, V. (2021). Family SES is associated with the gut microbiome in infants and children. Microorganisms, 9(8), 1608. doi:10.3390/microorganisms9081608.

  • Ferro, L. E., Sugino, K. Y., Klepac-Ceraj, V., & Comstock, S. S. (2021). The Abundance of Human Milk Oligosaccharide (HMO)-Metabolizing Genes in Fecal Samples from Six-Month-Old Human Infants. Microorganisms, 9(7), 1352. doi:10.3390/microorganisms9071352.

  • Ferro, L., Sugino, K., Klepac-Ceraj, V., & Comstock, S. (2021). Human Milk Oligosaccharide (HMO) Metabolizing Gene Abundances in Human Infant Fecal Samples. Current Developments in Nutrition, 5(Supplement_2), 741–741.

  • Tso, L., Bonham, K. S., Fishbein, A., Rowland, S., & Klepac-Ceraj, V. (2021). Targeted high-resolution taxonomic identification of Bifidobacterium Longum Subsp. Infantis using human milk oligosaccharide metabolizing genes. Nutrients, 13(8), 2833. doi:10.3390/nu13082833.

  • Peterson, D., Bonham, K. S., Rowland, S., Pattanayak, C. W., Consortium, R., & Klepac-Ceraj, V. (2021). Comparative analysis of 16S rRNA gene and metagenome sequencing in pediatric gut microbiomes. Frontiers in Microbiology, 12, 670336. doi:10.3389/fmicb.2021.670336.

  • Rojas, C. A., De Santiago Torio, A., Park, S., Bosak, T., & Klepac-Ceraj, V. (2021). Organic electron donors and terminal electron acceptors structure anaerobic microbial communities and interactions in a permanently stratified sulfidic lake. Frontiers in Microbiology, 12, 620424. doi:10.3389/fmicb.2021.620424.








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